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This table has entries for any uploads you have in progress. Click to resume or see more details about the status.
| Share ID | Status | Dataset type | Title | Actions |
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Enter metadata
Use the form or provided template to enter metadata for your dataset.
Upload dataset
Choose your dataset format and upload directly or provide a supported URL.
Dataset processing
Your dataset is processed and checked on the server.
Finalize submission
Your dataset gets fully integrated into the system here.
Curate dataset
Get the most out of your dataset by doing curation steps here.
The 'metadata' is the data describing your dataset, including things like title, authorship, sequencing protocols used, etc. This is the first step in uploading a dataset to the portal. All data uploaded are initially private to only your account (you can change this later in the Dataset Explorer)
Enter the metadata manually below OR fill out and upload from a spreadsheet template.
If a GEO ID is available, enter it here and the rest can be autofilled.
Please check the form above and correct these issues.
Choose the format of your dataset and upload it here. You can also provide a URL to a supported dataset.
These are simple, plain-text files in a bundle, usually compressed with tar/gzip or zip.
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Similar in format to 3-tab but rather than individual files each is a different tab in an Excel spreadsheet. Mostly for bulk RNA-seq data as it doesn't initial-scale very well for even medium-sized datasets.
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This is a binary format used by the Seurat package in R. If you've already been working with your dataset in R, including clustering and other analyses, this is the format to choose.
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Usually created by the Scanpy package in Python, this is a binary format that is very efficient for large datasets. If you've been working with your dataset in Python, this is the format to choose.
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Your dataset is being processed on the server. This may take a few minutes, depending on the size of the dataset. You can close your browser at any time and return to the uploader to check on the progress.
Your dataset has been processed and is ready to be submitted.
Please use the Feedback link on the left and provide this error message:
Your dataset has been submitted and is now available in the Dataset Explorer.
Right now your dataset is stored in the system but there are no visualizations created so users can explore it. Curation is the process of creating these visualizations, which can include things like bar charts, UMAPs, heatmaps, etc.
